›› 2012, Vol. 55 ›› Issue (1): 1-11.doi:

• 研究论文 •    下一篇

基于Solexa高通量测序的黄曲条跳甲转录组学研究

 贺华良, 宾淑英, 吴仲真, 林进添   

  1. 仲恺农业工程学院外来有害生物预警与控制研究所, 广州 510225
  • 收稿日期:2011-07-26 修回日期:2011-10-10 出版日期:2012-01-20 发布日期:2012-01-20
  • 通讯作者: 林进添 E-mail:linjtian@163.com
  • 作者简介:贺华良, 男, 1977年生, 湖南攸县人, 博士, 讲师, 从事农业害虫综合防治及分子生物学研究, E-mail: hhl_1234@126.com; 宾淑英, 女, 1964年生, 广东封开人, 副教授, 从事农业害虫综合防治及推广研究, E-mail: binsuying@163.com
  • 基金资助:

    国家自然科学基金青年科学基金项目(31101500)

Transcriptome characteristics of Phyllotreta striolata (Fabricius) (Coleoptera: Chrysomelidae) analyzed by using Illumina’s Solexa sequencing technology

HE  Hua-Liang, BIN  Shu-Ying, WU  Zhong-Zhen, LIN  Jin-Tian   

  1. Institute for Management of Invasive Alien Species, Zhongkai University of Agriculture and Engineering, Guangzhou 510225, China
  • Received:2011-07-26 Revised:2011-10-10 Online:2012-01-20 Published:2012-01-20
  • Contact: LIN Jin-Tian E-mail:linjtian@163.com

摘要: 黄曲条跳甲Phyllotreta striolata (Fabricius) 是十字花科蔬菜的重要害虫。为深入了解其遗传信息, 本研究应用新一代高通量测序技术Illumina’s Solexa平台对黄曲条跳甲成虫的转录组进行测序, 并结合SOAPdenovo拼接聚类等分析软件, 获取大量的EST和挖掘功能基因。本文最终获得了4 924条序列重叠群(contig), 其中包含2 209种与黑腹果蝇Drosophila melanogaster蛋白基因具直系同源的独立基因(unigene)和610种黄曲条跳甲物种特有的unigene。结合Gene Ontology (GO)数据库进行分析, 发现大部分的unigene具结合能力(binding capability)和催化活性(catalytic activity); 上百种unigene可聚类于生物学过程分类中的配子发生、 生殖腺发育和交配行为等重要功能。另外, 结合KEGG Pathway数据库分析发现, 共有363种unigene参与或涉及了40种代谢路径, 其中生物钟调控路径和植物次生代谢物路径等相关基因的发现, 有助于深入研究黄曲条跳甲行为发生的内在机理。Solexa高通量测序技术作为昆虫功能基因组研究的重要手段, 为发掘黄曲条跳甲功能基因发挥了重要作用, 也为在分子水平上研发黄曲条跳甲的防治新策略提供了更翔实的基因信息。

关键词: 黄曲条跳甲, Solexa测序, 序列重叠群, 独立基因, 转录组

Abstract: The striped flea beetle, Phyllotreta striolata (Fabricius), is an important pest damaging cruciferous vegetables. In order to investigate the profile of gene expression and elucidate the functional genes, we sequenced the transcriptome of the adult of P. striolata by Illumina’s Solexa sequencing technology, and analyzed the data of expressed sequence tags (ESTs) by using SOAPdenovo system. A total of 4 924 contigs were obtained including 2 209 unigenes of orthologous genes relating to Drosophila melanogaster and 610 species-specific unigenes of P. striolata based on Gene Ontology and KEGG databases. We found that most of unigenes contain function domains with binding capacity and catalytic activity. More than 100 unigenes are involved in gamete generation, ovarian follicle cell development and mating behavior. Three hundred sixty-three unigenes may be involved in 40 different metabolic pathways based on KEGG database. The finding that 363 unigenes are involved in regulation pathway of biological rhythm and plant secondary metabolites will be useful to clarify the mechanism of behaviors of this insect such as oviposition rhythm, etc. Moreover, the sequence resources presented in this study provide useful information to develop new strategies to manage this pest.

Key words: Phyllotreta striolata, Illumina’s Solexa sequencing technology, contig, unigene, transcriptome

中图分类号: 

  • Q966