›› 2015, Vol. 58 ›› Issue (8): 817-825.doi:

• 研究论文 •    下一篇

大垫尖翅蝗转录组分析

金永玲1,2, 丛斌1,*, 王丽艳2, 张海燕2, 董辉1   

  1. (1. 沈阳农业大学植物保护学院, 沈阳 110161; 2. 黑龙江八一农垦大学农学院, 黑龙江大庆 163319)
  • 出版日期:2015-08-20 发布日期:2015-08-20
  • 作者简介:金永玲, 女, 1976年生, 黑龙江双城市人, 博士研究生, 讲师, 研究方向为农业昆虫与害虫防治, E-mail: gygjyl08@163.com

An analysis of the transcriptome of Epacromius coerulipes (Orthoptera: Acrididae)  

JIN Yong-Ling 1,2, CONG Bin1,*, WANG Li-Yan2, ZHANG Hai-Yan2, DONG Hui1   

  1. (1. Plant Protection College, Shenyang Agricultural University, Shenyang 110161, China; 2. Agricultural College, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang 163319, China)
  • Online:2015-08-20 Published:2015-08-20

摘要: 【目的】大垫尖翅蝗 Epacromius coerulipes (Ivanov)是广泛分布的草原蝗虫之一,但其基因资源缺乏。为了获得大垫尖翅蝗的基因数据,对其进行了转录组测序和分析。【方法】利用Illumina公司paired-end转录组的测序技术进行从头组装。【结果】总计获得了63 033条unigenes,平均长度为772 bp,N50为1 589 bp。通过BLAST搜索,确定有25 132条(39.87%)unigenes与NCBI数据库已知的蛋白质相匹配,其中有24 841,16 490,11 558和8 013条unigenes成功注释到Nr,Swiss-Prot,GO和COG数据库中。KEGG数据库中,7 218条unigenes形成218条代谢或信息通路。其中,189条unigenes参与外源性物质或药物的代谢通路。进一步分析显示,213条unigenes被确认为可能参与外源性物质的解毒作用,29条unigenes被确定为编码杀虫剂的目标蛋白。此外,检测到5 696条简单重复序列。【结论】该转录组测序分析将为进一步研究大垫尖翅蝗的基因功能分析及杀虫剂的抗药性机制分析奠定分子基础。

关键词: 大垫尖翅蝗, 转录组, 基因注释, GO数据库, COG数据库, KEGG数据库, 简单重复序列

Abstract: 【Aim】 Epacromius coerulipes (Ivanov) is one of the most widely distributed grassland locusts. However, there is a lack of genomic resources. In order to obtain genetic data of E. coerulipes, this study conducted the transcriptome sequencing and analysis. 【Methods】 De novo assembly of the transcriptome was conducted using Illumina paired-end sequencing technology. 【Results】 In total, 63 033 unigenes with a mean length of 772 bp and an N50 length of 1 589 bp were obtained. Of these unigenes, 25 132(39.87%) unigenes were matched with the known proteins in the National Center for Biotechnology Information (NCBI) database, as determined by BLAST search, with 24 841, 16 490, 11 558 and 8 013 unigenes assigned to Nr database, Swiss-Prot, Gene Ontology (GO) and Clusters of Orthologous Groups (COG), respectively. In KEGG database, a total of 7 218 unigenes were assigned to 218 known pathways. Among these, 189 unigenes were involved in metabolic pathways of xenobiotics or drugs. In-depth analysis of the data showed that 213 unigenes were identified as potentially involved in the detoxification of xenobiotics, and 29 unigenes were identified as encoding insecticide target proteins. In addition, 5 696 simple sequence repeats (SSRs) were detected. 【Conclusion】 This study lays the foundation for further research on gene function analysis and molecular resistance mechanisms to insecticides in E. coerulipes.

Key words: Epacromius coerulipes, transcriptome, gene annotation, Gene Ontology (GO), Clusters of Orthologous Groups (COG), Kyoto Encyclopedia of Genes and Genomes (KEGG), simple sequence repeat (SSR)