昆虫学报 ›› 2024, Vol. 67 ›› Issue (5): 700-711.doi: 10.16380/j.kcxb.2024.05.013

• 研究论文 • 上一篇    下一篇

长额负蝗和黄星蝗线粒体全基因组测定及蝗总科系统发生分析

常会会1, 刘玄增2, 严可欣1, 谢朝晖1,*   

  1. (1. 河南城建学院生命科学与工程学院, 平顶山 467000; 2. 陕西师范大学生命科学学院, 西安 710062)
  • 出版日期:2024-05-20 发布日期:2024-06-20

Sequencing of the complete mitochondrial genomes of Atractomorpha lata (Orthoptera: Pyrgomorphidae) and Aularches miliaris (Orthoptera: Chrotogonidae) and phylogenetic analysis of Acridoidea

CHANG Hui-Hui1, LIU Xuan-Zeng2, YAN Ke-Xin1, XIE Zhao-Hui1,*   

  1.  (1. College of Life Sciences and Engineering, Henan University of Urban Construction, Pingdingshan 467000, China; 2. College of Life Sciences, Shaanxi Normal University, Xi′an 710062, China)
  • Online:2024-05-20 Published:2024-06-20

摘要: 【目的】对长额负蝗Atractomorpha lata和黄星蝗Aularches miliaris的线粒体全基因组进行测定和分析,从线粒体基因组水平探讨蝗总科(Acridoidea)内部尤其是锥头蝗科(Pyrgomorphidae)和瘤锥蝗科(Chrotogonidae)之间的系统发生关系。【方法】基于Illumina HiSeq 2500测序平台测定长额负蝗和黄星蝗线粒体基因组序列,对线粒体基因组结构、碱基组成、蛋白质编码基因(protein-coding genes, PCGs)密码子使用频率(relative synonymous codon usage, RSCU)、tRNA二级结构等进行分析。以已知的蝗总科34个物种的线粒体基因组为内群,以蜢总科(Eumastacoidea)2个物种的线粒体基因组为外群,构建13 PCGs+2 rRNA基因序列联合数据集,并分别采用最大似然法(maximum likelihood, ML)和贝叶斯推断法(Bayesian inference, BI)构建蝗总科系统发生关系。【结果】长额负蝗和黄星蝗线粒体基因组全长分别为15 561和15 798 bp,均为闭合环状分子(GenBank登录号分别为OR544953和OR253923),均包含37个基因(13个PCGs、 22个tRNA基因、 2个rRNA基因)及1个控制区,且均存在KD基因重排现象(即trnK-trnD发生重排形成trnD-trnK), A+T含量分别为74.4%和75.8%,存在明显的AT偏好性,基因排序、碱基组成、氨基酸组成和RSCU均与锥头蝗科和瘤锥蝗科其他物种相似。22个tRNA基因中有21个均能形成三叶草结构,只有trnSAGN缺少DHU臂。ML和BI法构建的系统发生树具有相同的拓扑结构,癞蝗科(Pamphagidae)、斑腿蝗科(Catantopidae)、斑翅蝗科(Oedipodidae)、网翅蝗科(Arcypteridae)、槌角蝗科(Gomphoceridae)及剑角蝗科(Acrididae)聚为一支,且支持癞蝗科、斑翅蝗科和槌角蝗科的单系性;锥头蝗科和瘤锥蝗科物种聚为一支,并与蝗总科其他物种形成姐妹群关系;锥头蝗科负蝗亚科(Atractomorphinae)具有单系性,瘤锥蝗科因锥头蝗科物种的加入而不具有单系性。【结论】本研究首次对长额负蝗和黄星蝗线粒体全基因组进行了测定和分析,并从线粒体基因组水平构建了蝗总科系统发生树,结果支持锥头蝗科、癞蝗科、斑翅蝗科和槌角蝗科单系性。锥头蝗科和瘤锥蝗科具有较近的亲缘关系,两个科的物种相互嵌套形成一个分支,支持将中国蝗总科分类系统中的锥头蝗科和瘤锥蝗科合并为一个科的观点。

关键词: 线粒体基因组, 系统发生, 蝗总科, 锥头蝗科, 瘤锥蝗科

Abstract: -【Aim】 To sequence and analyze the complete mitochondrial genomes of Atractomorpha lata and Aularches miliaris, and to explore the phylogenetic relationships of Acridoidea at the mitochondrial genome level, especially the phylogenetic relationships between Pyrgomorphidae and Chrotogonidae.【Methods】 The mitochondrial genome sequences of A. lata and A. miliaris were determined on the Illumina HiSeq 2500 sequencing platform, and the mitochondrial genome structure, base composition, relative synonymous codon usage (RSCU) of protein-coding genes (PCGs) and tRNA secondary structure were analyzed. A gene sequence dataset of 13 PCGs+2 rRNA genes was constructed by using the mitochondrial genomes of 34 species known to Acridoidea as ingroups and those of two Eumastacoidea species as outgroups. The phylogenetic relationships of Acridoidea were constructed by maximum likelihood (ML) and Bayesian inference (BI) methods. 【Results】 The full-length mitochondrial genomes of A. lata and A. miliaris (GenBank accession numbers: OR544953 and OR253923, respectively) are 15 561 and 15 798 bp, respectively, both of which are closed circular molecules. The mitochondrial genomes of both A. lata and A. miliaris contain 37 genes (13 PCGs, 22 tRNA genes, 2 rRNA genes) and one control region, and KD gene rearrangement exists (trnK-trnD rearranges to form trnD-trnK). The A+T content of the mitochondrial genomes of A. lata and A. miliaris are 74.4% and 75.8%, respectively, showing obvious AT content bias. The gene arrangement, base composition, amino acid composition and RSCU of the mitochondrial genomes of A. lata and A. miliaris are similar to those of other species of Pyrgomorphidae and Chrotogonidae. All tRNA genes show the typical clover-leaf secondary structure except for the absence of DHU arm of trnSAGN. The phylogenetic trees constructed by ML and BI methods had the same topological structure. Pamphagidae, Catantopidae, Oedipodidae, Arcypteridae, Gomphoceridae and Acrididae were clustered together, and the monophyly of Pamphagidae, Oedipodidae and Gomphoceridae was supported. The species of Pyrgomorphidae and Chrotogonidae clustered together in a clade and formed sister groups with other species of Acridoidea. The monophyly of Atractomorphinae of Pyrgomorphidae was supported, while the monophyly of Chrotogonidae was not supported due to the addition of Pyrgomorphidae species. 【Conclusion】 In this study, the mitochondrial genomes of A. lata and A. miliaris were determined and analyzed for the first time. At the mitochondrial genome level, the phylogenetic trees of Acridoidea were constructed, and the results indicated that the monophyly of Pyrgomorphida, Pamphagidae, Oedipodidae and Gomphoceridae was supported. Pyrgomorphidae and Chrotogonidae were closely related, forming a clade with species nested within each other, supporting the merging of Pyrgomorphidae and Chrotogonidae of the Chinese taxonomic system into one family.

Key words:  Mitochondrial genome, phylogeny, Acridoidea, Pyrgomorphidae, Chrotogonidae