›› 2013, Vol. 56 ›› Issue (9): 1063-1074.

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印度疟疾媒介库态按蚊卵黄蛋白原基因的克隆与生物信息学分析(英文)

Monika MIGLANI, Surendra Kumar GAKHAR*   

  • 出版日期:2013-09-20 发布日期:2013-09-20

Cloning and bioinformatical analysis of vitellogenin gene of the Indian malaria vector Anopheles culicifacies (Diptera: Culicidae)

Monika MIGLANI, Surendra Kumar GAKHAR*   

  • Online:2013-09-20 Published:2013-09-20

摘要: 卵黄蛋白原(vitellogenin, Vg)是主要的卵黄蛋白前体, 在雌虫血餐之后在脂肪体内大量合成。卵黄蛋白原的调节元件已经被用于驱动蚊子(与寄生虫发生最大相互作用的场所)中抗寄生基因的组织特异性表达。不过, 迄今为止, 对在印度引起60%~70%疟疾发生的库态按蚊Anopheles culicifacies中的内源启动子尚未进行过分析。本研究通过PCR扩增了包括5′端上游调节区在内的库态按蚊A. culicifacies卵黄蛋白原基因, 并命名为AncuVg (GenBank登录号为JN113091)。它含有一个大约6.2 kb的开放阅读框, 编码2 052个氨基酸, 具有一个16个氨基酸残基的推断的信号肽。也含有一个N_Vitellogenin区和一个VWF型D区, 这两个区在其他昆虫卵黄蛋白原中也保守。估计多肽分子量为238.0 kDa, 含有4个共有的(RXXR/S)切割位点, C端附近有一个GL/ICG基序, 其后是9个半胱氨酸残基和1个位于GL/ICCG基序上游第18个氨基酸残基处的DGXR 基序。在推断的氨基酸序列上发现3个聚丝氨酸区, 其中2个位于氨基端, 1个位于羧基端。根据同义密码子相对使用概率值, 通过有效密码子数, 测定了蚊子卵黄蛋白原基因密码子的偏倚性程度。也预测了库态按蚊A. culicifacies Vg的三维结构。分析了AncuVg基因, 以理解Vg基因的转录调节。对Vg基因5′端上游区进行的系统发育分析表明, 它们聚类于蚊子的3大分枝。也用各种生物信息学工具分析分析了Vg的同源性和特征。  

关键词: 库态按蚊, 卵黄蛋白原; , 蚊子, 系统发育分析, 聚丝氨酸, 转录因子

Abstract:  Vitellogenin (Vg) is the major yolk protein precursor which is synthesized abundantly in the insect fat body after the female ingests blood meal. The regulatory elements of vitellogenin have been used to drive the tissue specific expression of anti parasitic gene in mosquitoes, where its maximum interaction could take place with the parasite. However, no endogenous promoter has been analysed so far in the Indian malaria vector Anopheles culicifacies which is responsible for 60%-70% of malaria cases in India. In this study, the vitellogenin gene including 5′ upstream regulatory region of Anopheles culicifacies was cloned after PCR amplification and named AncuVg (GenBank accession number JN113091). It contains an ORF of approximately 6.2 kb encoding 2 052 amino acids with a putative signal peptide of 16 residues. It also contains an N_Vitellogenin region and a VWF type D domain, that are found conserved in other insect Vgs too. The molecular weight of the predicted polypeptide is 238.0 kDa. It possesses four consensus (RXXR/S) cleavage sites and close to the C-terminus there is a GL/ICG motif followed by nine cysteine residues and a DGXR motif, located 18 residues upstream from the GL/ICCG motif. Three polyserine regions were found in the deduced amino acid sequence: two in the amino terminal region and one in the carboxy terminal region. The extent of codon bias in mosquito vitellogenin genes based on the relative synonymous codon usage values were determined by the effective number of codons. The 3D structure of A. culicifacies Vg was also predicted. The 5′ upstream region of the AncuVg gene was analyzed to understand the regulation of Vg gene transcription. Phylogenetic analysis using the 5′ upstream region of Vg genes showed their conformation to three major clades among mosquitoes. Homology and other characteristic features of Vg have also been analyzed using various bioinformatic tools.

Key words: Anopheles culicifacies, vitellogenin, mosquito, phylogenetic analysis, polyserine, transcription factor