Select
Screening of reference genes for qRT-PCR in Conogethes punctiferails (Lepidoptera: Crambidae)
YANG Ling, HU Xiao-Jing, XU Zhi-Feng, HE Lin, XIAO Wei
2017, 60(11):
1266-1277.
doi:10.16380/j.kcxb.2017.11.004
Abstract
(
1423 )
PDF (2647KB)
(
713
)
Related Articles |
Metrics
【Aim】 This study aims to screen and verify stably expressed genes under given conditions as reference genes for quantitative real-time PCR (qRT-PCR) in Conogethes punctiferalis , so as to provide the basis for quantitative studies of genes of this moth. 【Methods】 Based on transcriptomics sequencing results in C. punctiferalis and reported reference genes in other insect species, six candidate genes including β-actin gene (ACT ), glyceraldehyde 3-phosphate dehydrogenase gene (GAPDH ), ribosomal protein 49 gene (RP 49), alpha tubulin gene (α-tub), ribosomal protein L13 gene (RPL 13) and vacuolar-type ATPase gene (V-ATPase ) were cloned, and their expression levels in different developmental stages and different adult tissues were measured by qRT-PCR. Then the stabilities of these candidate genes were evaluated by a series of programs including ΔCt method, GeNorm, NormFinder, BestKeeper and an online program, RefFinder. Finally, the stabilities of selected reference genes were validated with an olfactory receptor co-receptor gene (Orco ) and pheromone binding protein 1 gene (PBP 1). 【Results】 Analyzed by four programs including ΔCt method, GeNorm, NormFinder and BestKeeper, similar rankings of six candidate genes were obtained, among which RP 49, RPL 13 and GAPDH were the most stable genes in different developmental stages and different adult tissues, and ACT was ranked as the least stable gene despite of experimental conditions by all programs. Comprehensive analysis with RefFinder further showed that in different adult tissues, RPL 13 was the most stable gene, followed by RP 49, and in different developmental stages, RP 49 was the most stable gene, followed by GAPDH . Additionally, the optimal number of reference genes was calculated by GeNorm as 2. Finally, the stabilities of selected reference genes were validated with Orco and PBP 1 as target genes. The results indicated that when two pairs of genes, RPL 13 and RP 49, and RP 49 and GAPDH , were respectively used as reference genes, Orco and PBP 1 showed reliable expression patterns, which were consistent with life habits of C. punctiferalis and the results of the previous research. The expression patterns of Orco and PBP 1, however, were irregular when ACT was used as the reference gene. 【Conclusion】 In C. punctiferalis , two pairs of genes, RPL 13 and RP 49, and RP 49 and GAPDH , are recommended as reference genes in different adult tissues and different developmental stages, respectively.