昆虫学报 ›› 2024, Vol. 67 ›› Issue (7): 987-996.doi: 10.16380/j.kcxb.2024.07.009

• 研究论文 • 上一篇    下一篇

花胸姬蜂线粒体全基因组测序及姬蜂总科系统发育关系分析

高成龙1,2, 扈丽丽1, 黄华毅1, 陈刘生1, 黄咏槐1, 崔高峰1, 赵丹阳1,*   

  1. (1. 广东省林业科学研究院, 广东省森林培育与保护利用重点实验室, 广州 510520; 2. 华南农业大学植物保护学院, 广州 510642)
  • 出版日期:2024-07-20 发布日期:2024-08-26

Sequencing of the complete mitochondrial genome of Gotra octocinctus (Hymenoptera: Ichneumonidae) and phylogenetic analysis of Ichneumonoidea

GAO Cheng-Long1,2, HU Li-Li1, HUANG Hua-Yi1, CHEN Liu-Sheng1, HUANG Yong-Huai1, CUI Gao-Feng1, ZHAO Dan-Yang1,*   

  1. (1. Guangdong Provincial Key Laboratory of Forest Protection and Utilization, Guangdong Academy of Forestry, Guangzhou 510520, China; 2. College of Plant Protection, South China Agricultural University, Guangzhou 510642, China)
  • Online:2024-07-20 Published:2024-08-26

摘要: 【目的】测定花胸姬蜂Gotra octocinctus线粒体全基因组序列,分析并探讨其基因组结构及姬蜂总科(Ichneumonoidea)的系统发育关系。【方法】采用Illumina NovaSeq测序平台,首次对花胸姬蜂线粒体全基因组进行测序,分析其基因组结构特点和碱基组成。基于13个蛋白编码基因序列,结合GenBank已有的姬蜂总科47个种的完整线粒体基因组序列,选取小蜂总科(Chalcidoidea)2个物种线粒体基因组序列作为外群,分别使用贝叶斯法(Bayesian inference, BI)和最大似然法(maximum likelihood method, ML)构建姬蜂总科系统发育树。【结果】花胸姬蜂线粒体基因组全长16 003 bp(GenBank登录号:OP850580.1),由22个tRNA基因、 13个蛋白编码基因、 2个rRNA基因和1个控制区(control region, CR)组成。线粒体基因组碱基组成呈现明显的AT偏向性, AT偏斜和GC偏斜均小于0。花胸姬蜂线粒体基因组存在4处基因重排,基因组中有13处基因重叠区,共85 bp,以及17处基因间隔区,共1 072 bp。基于13个PCG序列构建的系统发育树显示,优姬蜂亚科(Eucerotinae)为自然单系群,蚜茧蜂亚科(Aphidiinae)与茧蜂科(Braconidae)的“圆口类”构成姐妹群。【结论】本研究测定并分析了花胸姬蜂线粒体全基因组序列,发现姬蜂科(Ichneumonidae)昆虫线粒体基因组普遍存在trnI-trnQ-trnM区域的基因重排现象,为进一步系统的研究姬蜂总科线粒体基因组提供数据支持。

关键词: 姬蜂总科, 花胸姬蜂, 线粒体基因组, 基因重排, 系统发育

Abstract: 【Aim】To sequence the complete mitochondrial genome of Gotra octocinctus, anlayze and explore the genome structure and phylogenetic relationship of Ichneumonoidea. 【Methods】 The complete mitochondrial genome of G. octocinctus was firstly sequenced on the Illumina NovaSeq platform, and then the general features and base composition of the mitochondrial genome were analyzed. Combined with the 47 mitochondrial genome sequences of Ichneumonoidea published in GenBank, the phylogenetic trees of Ichneumonoidea were constructed with two species in Chalcidoidea as outgroups based on the 13 proteincoding gene (PCG) sequences using Bayesian inference (BI) and maximum likelihood (ML) methods. 【Results】The fulllength mitochondrial genome of G. octocinctus is 16 003 bp (GenBank accession no.: OP850580.1), and consists of 22 tRNA genes, 13 PCGs, two rRNA genes and one control region (CR). The base composition of mitochondrial genome was clearly AT-biased and exhibited the negative AT-skew and GC-skew. There were four gene rearrangements, 13 overlapping regions (in total 85 bp) and 17 interspaced regions (in total 1 072 bp) in the mitochondrial genome of G. octocinctus. The phylogenetic tree based on 13 PCG sequences showed that Eucerotinae is a natural monophyletic group, the Aphidiinae and the “cyclostome” of Braconidae are sister group. 【Conclusion】 In this study, we sequenced and analyzed the complete mitochondrial genome of G. octocinctus, and found that the trnI-trnQ-trnM gene rearrangement events are common in the mitochondrial genome of Ichneumonidae, providing data for the further systematic research of mitogenomes of Ichneumonoidea.

Key words: Ichneumonoidea; Gotra octocinctus, mitochondrial genome, gene rearrangement, phylogeny