昆虫学报 ›› 2025, Vol. 68 ›› Issue (1): 110-122.doi: 10.16380/j.kcxb.2025.01.011

• 研究论文 • 上一篇    下一篇

基于线粒体基因组的云南省橘小实蝇种群遗传结构分析

冯新颖1, 王璇1, 李冰艳1, 曾彪2, 李虎1, 刘志琦1, 宋凡1,*   

  1. (1. 中国农业大学昆虫学系, 北京 100193; 2. 云南省农业科学院, 昆明 650221)
  • 出版日期:2025-01-20 发布日期:2025-02-25

Analysis of the genetic structure of Bactrocera dorsalis (Diptera: Tephritidae) populations in Yunnan Province, southwestern China based on mitochondrial genome

FENG Xin-Ying1, WANG Xuan1, LI Bing-Yan1, ZENG Biao2, LI Hu1, LIU Zhi-Qi1, SONG Fan1,*   

  1.  (1. Department of Entomology, China Agricultural University, Beijing 100193, China; 2. Yunnan Academy of Agricultural Sciences, Kunming 650221, China)
  • Online:2025-01-20 Published:2025-02-25

摘要: 【目的】基于线粒体基因组数据,明晰云南省橘小实蝇Bactrocera dorsalis种群遗传多样性和遗传结构,揭示其在云南的扩散路径,为橘小实蝇防控策略的制定和规划提供理论依据。【方法】2022年7-9月收集云南省橘小实蝇15个地理种群,使用DNBSEQ-T7平台进行线粒体基因组测序、组装与注释;基于13个蛋白质编码基因(protein-coding genes, PCGs)序列使用MEGA-X 10.0.5, DnaSP 6.12和Arlequin 3.5.2软件分析种群遗传多样性与遗传分化;基于13个PCG和COI序列使用最大似然法构建系统发育树,使用PopART4.8.4软件构建单倍型网络;通过中性检验和错配分布分析种群历史动态。【结果】共获得云南橘小实蝇15个地理种群149条线粒体全基因组,包含共1 697个变异位点,总体表现出高水平的遗传多样性(Pi=0.00783, K=87.591, Hd=0.9994);种群间遗传距离为0.00702~0.00874,遗传分化指数为-0.02345~0.05203;系统发育树和单倍型网络均未呈现出明显的种群结构;橘小实蝇云南种群历史上发生过扩张,云南西部和南部为橘小实蝇最早入侵区域,北部地区橘小实蝇入侵时间较晚。【结论】云南省橘小实蝇不同组群均呈现出高水平遗传多样性和弱遗传结构,线粒体基因组变异位点丰富且广泛分布在所有种群中,不同地理种群间没有明显分化,推测橘小实蝇由云南西部及南部向北部地区扩散。

关键词: 橘小实蝇, 线粒体基因组, 遗传多样性, 种群动态

Abstract:  【Aim】 Based on mitochondrial genome data, we aim to clarify the genetic diversity and genetic structure of the population of Bactrocera dorsalis in Yunnan Province, southwestern China, and reveal the dispersal routes of B. dorsalis in Yunnan, so as to provide the theoretical basis for the formulation and plan of the control strategy of B. dorsalis. 【Methods】 From July to September in 2022, we collected 15 geographical populations of B. dorsalis in Yunnan Province. The mitochondrial genomes were sequenced, assembled and annotated using the DNBSEQ-T7 platform. The genetic diversity and genetic differentiation were detected using MEGA-X 10.0.5, DnaSP 6.12 and Arlequin 3.5.2 software based on the sequences of 13 protein-coding genes (PCGs). The phylogenetic tree was constructed using maximum likelihood method and the haplotype network was constructed using PopART 4.8.4 software based on the sequences of 13 PCGs and COI. The historical dynamics of the populations were analyzed by neutrality test and mismatch distribution. 【Results】 A total of 149 complete mitochondrial genomes from 15 geographical populations of B. dorsalis in Yunnan were obtained, including 1 697 variable sites, showing a high level of genetic diversity (Pi=0.00783, K=87.591,Hd=0.9994). The genetic distance between the populations ranged from 0.00702 to 0.00874, and the genetic differentiation index was from -0.02345 to 0.05203. The phylogenetic tree and haplotype network did not show obvious population structure. The B. dorsalis population expansion occurred in Yunnan. The western and southern regions of Yunnan were the earliest invaded areas of B. dorsalis, while the northern region of Yunnan was one of the invaded areas later. 【Conclusion】 Different groups of B. dorsalis in Yunnan Province showed a high level of genetic diversity and weak genetic structure, and the mitochondrial genome variable sites were abundant and widely distributed in all populations. There was no obvious difference among these geographical populations. It is speculated that B. dorsalis spreads from the western and southern to the northern regions of Yunnan.

Key words: Bactrocera dorsalis, mitochondrial genome, genetic diversity, population dynamics